Welcome to Bat Cell Atlas !

This site is used to calculate and visualize the expression of specific gene in differnt cells and tissues.

The single cell transcriptome data from the male Chinese rufous horseshoe bat, containing comprises 82,924 cells from 19 organs and tissues.

The data from two bats were merged, except that the data for heart, intestine and white adipose were from one bat (sequencing for the other bat failed). Cells with less than 1000 UMIs or 500 genes were discarded, the average sequencing depth per cell was 5000 (UMI). Batch effects were corrected by Batch balanced KNN package (bbknn, version 1.3.1), reads were mapped to the bat genome (GCF_001888835.1) using CellRanger (version 3.0.0). Dimensionality reduction were done by UMAP.



Visualization


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% 0 % > 0 Mean Median Median > 1 Num of cells Tissue
10.68 89.32 6.770520210266113 5.9559255 6.7114363 103 Adventitial fibroblast
5.31 94.69 12.021726608276367 10.924981 11.309018 603 Alveolar epithelial type 1 cell
7.13 92.87 4.968023777008057 4.511957 4.809865 841 Alveolar epithelial type 2 cell
19.86 80.14 8.015778541564941 7.2568927 8.684324 1289 Alveolar fibroblast
0.44 99.56 15.355925559997559 14.587664 14.626968 456 Alveolar macrophage
32.34 67.66 5.034942150115967 4.759638 6.2695923 167 B cell
20.62 79.38 7.815668106079102 7.0921984 8.342634 577 Capillary type 1 cell
17.43 82.57 8.686073303222656 8.046671 9.37207 1658 Capillary type 2 cell
16.67 83.33 4.9814453125 5.006757 5.8411217 30 Ciliated cell
8.14 91.86 5.878544330596924 5.2698183 5.640215 344 Classical monocyte
8.16 91.84 6.6337971687316895 6.2698927 7.04818 98 Interstitial macrophage
23.81 76.19 5.215480327606201 4.7863293 5.688077 42 Lymphatic cell
24.21 75.79 10.726903915405273 8.510639 11.363637 756 Macrophage
18.18 81.82 5.378968715667725 5.593693 5.977938 44 Mesothelial cell
12.3 87.7 11.492878913879395 10.688771 10.995601 122 Myofibroblast
14.93 85.07 9.7713041305542 8.557981 9.903447 355 Natural killer T cell
0.0 100.0 19.51218605041504 15.967506 15.967506 14 Neutrophil
21.36 78.64 6.268770694732666 5.5581293 6.934812 632 Non-classical monocyte
14.02 85.98 8.316213607788086 7.243315 8.424599 378 T cell
1.36 98.64 8.909260749816895 8.535337 8.572127 147 Untyped